Search results

  • Full text

  • Document type

    • Publication year

  • Organisation

Results: 55
Number of items: 55
  • Open Access
    de Jong, L., Roseboom, W., & Kramer, G. (2021). A composite filter for low FDR of protein-protein interactions detected by in vivo cross-linking. Journal of Proteomics, 230, Article 103987. https://doi.org/10.1016/j.jprot.2020.103987
  • Open Access
    de Jong, L., Roseboom, W., & Kramer, G. (2021). Towards low false discovery rate estimation for protein-protein interactions detected by chemical cross-linking. Biochimica et Biophysica Acta. Proteins and Proteomics, 1869(7), Article 140655. https://doi.org/10.1016/j.bbapap.2021.140655
  • Open Access
    Roseboom, W., Nazir, M. G., Meiresonne, N. Y., Mohammadi, T., Verheul, J., Buncherd, H., Bonvin, A. M. J. J., de Koning, L. J., de Koster, C. G., de Jong, L., & den Blaauwen, T. (2018). Mapping the Contact Sites of the Escherichia coli Division-Initiating Proteins FtsZ and ZapA by BAMG Cross-Linking and Site-Directed Mutagenesis. International Journal of Molecular Sciences, 19(10), Article 2928. https://doi.org/10.3390/ijms19102928
  • Open Access
    de Jong, L., de Koning, E. A., Roseboom, W., Buncherd, H., Wanner, M. J., Dapic, I., Jansen, P. J., van Maarseveen, J. H., Corthals, G. L., Lewis, P. J., Hamoen, L. W., & de Koster, C. G. (2017). In-Culture Cross-Linking of Bacterial Cells Reveals Large-Scale Dynamic Protein-Protein Interactions at the Peptide Level. Journal of Proteome Research, 16(7), 2457-2471. https://doi.org/10.1021/acs.jproteome.7b00068
  • Buncherd, H., Roseboom, W., Chokchaichamnankit, D., Sawangareetrakul, P., Phongdara, A., Srisomsap, C., de Jong, L., & Svasti, J. (2016). β-Elimination coupled with strong cation-exchange chromatography for phosphopeptide analysis. Rapid Communications in Mass Spectrometry, 30(14), 1695-1704. https://doi.org/10.1002/rcm.7606
  • Open Access
    Glas, M., van den Berg van Saparoea, H. B., McLaughlin, S. H., Roseboom, W., Liu, F., Koningstein, G. M., Fish, A., den Blaauwen, T., Heck, A. J. R., de Jong, L., Bitter, W., de Esch, I. J. P., & Luirink, J. (2015). The Soluble Periplasmic Domains of Escherichia coli Cell Division Proteins FtsQ/FtsB/FtsL form a Trimeric Complex with Sub-micromolar Affinity. The Journal of Biological Chemistry, 290(35), 21498-21509. https://doi.org/10.1074/jbc.M115.654756
  • Buncherd, H., Roseboom, W., Ghavim, B., Du, W., de Koning, L. J., de Koster, C. G., & de Jong, L. (2014). Isolation of cross-linked peptides by diagonal strong cation exchange chromatography for protein complex topology studies by peptide fragment fingerprinting from large sequence databases. Journal of Chromatography A, 1348, 34-46. https://doi.org/10.1016/j.chroma.2014.04.083
  • Buncherd, H., Roseboom, W., de Koning, L. J., de Koster, C. G., & de Jong, L. (2014). A gas phase cleavage reaction of cross-linked peptides for protein complex topology studies by peptide fragment fingerprinting from large sequence database. Journal of Proteomics, 108, 65-77. https://doi.org/10.1016/j.jprot.2014.05.003
  • Borirak, O., Bekker, M., Rolfe, M. D., Dekker, H. L., de Jong, L., de Koster, C. G., Hoefsloot, H. C. J., de Koning, L. J., & Hellingwerf, K. J. (2013). Dynamic changes of the Escherichia coli transcriptome and proteome exerted by glucose repression. The FASEB Journal, 27(1 Supplement), Article lb136. http://www.fasebj.org/content/27/1_Supplement/lb136.abstract
  • Open Access
    Buncherd, H. (2013). Development of enrichment methods for cross-linked peptides to study the dynamic topology of large protein complexes by mass spectrometry. [Thesis, fully internal, Universiteit van Amsterdam].
Page 1 of 6