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Results: 53
Number of items: 53
  • Open Access
    Ziesemer, K. A., Mann, A. E., Sankaranarayanan, K., Schroeder, H., Ozga, A. T., Brandt, B. W., Zaura, E., Waters-Rist, A., Hoogland, M., Salazar-García, D. C., Aldenderfer, M., Speller, C., Hendy, J., Weston, D. A., MacDonald, S. J., Thomas, G. H., Collins, M. J., Lewis, C. M., Hofman, C., & Warinner, C. (2015). Intrinsic challenges in ancient microbiome reconstruction using 16S rRNA gene amplification. Scientific Reports, 5, Article 16498. https://doi.org/10.1038/srep16498
  • Open Access
    Liao, Y., Chen, J., Brandt, B. W., Zhu, Y., Li, J., van Loveren, C., & Deng, D. M. (2015). Identification and functional analysis of genome mutations in a fluoride-resistant Streptococcus mutans strain. PLoS ONE, 10(4), Article e0122630. https://doi.org/10.1371/journal.pone.0122630
  • Open Access
    Zaura, E., Brandt, B. W., Teixeira de Mattos, M. J., Buijs, M. J., Caspers, M. P. M., Rashid, M. U., Weintraub, A., Nord, C. E., Savell, A., Hu, Y., Coates, A. R., Hubank, M., Spratt, D. A., Wilson, M., Keijser, B. J. F., & Crielaard, W. (2015). Same exposure but two radically different responses to antibiotics: resilience of the salivary microbiome versus long-term microbial shifts in feces. MBio, 6(6), Article e01693-15. https://doi.org/10.1128/mBio.01693-15
  • May, A., Abeln, S., Crielaard, W., Heringa, J., & Brandt, B. W. (2014). Unraveling the outcome of 16S rDNA-based taxonomy analysis through mock data and simulations. Bioinformatics, 30(11), 1530-1538. https://doi.org/10.1093/bioinformatics/btu085
  • Open Access
    El-Kebir, M., Brandt, B. W., Heringa, J., & Klau, G. W. (2014). NatalieQ: A web server for protein-protein interaction network querying. BMC Systems Biology, 8, 40. https://doi.org/10.1186/1752-0509-8-40
  • Pajić, V. S., Pavlović-Lažetić, G. M., Beljanski, M. V., Brandt, B. W., & Pajić, M. B. (2013). Towards a database for genotype-phenotype association research: mining data from encyclopaedia. International Journal of Data Mining and Bioinformatics, 7(2), 196-213. https://doi.org/10.1504/IJDMB.2013.053196
  • Open Access
    Haitjema, A., Brandt, B. W., Ameziane, N., May, P., Heringa, J., de Winter, J. P., Joenje, H., & Dorsman, J. C. (2013). A protein prioritization approach tailored for the FA/BRCA pathway. PLoS ONE, 8(4), e62017. https://doi.org/10.1371/journal.pone.0062017
  • de Groot, P. W. J., & Brandt, B. W. (2012). ProFASTA: a pipeline web server for fungal protein scanning with integration of cell surface prediction software. Fungal Genetics and Biology, 49(2), 173-179. https://doi.org/10.1016/j.fgb.2011.12.009
  • Bonder, M. J., Abeln, S., Zaura, E., & Brandt, B. W. (2012). Comparing clustering and pre-processing in taxonomy analysis. Bioinformatics, 28(22), 2891-2897. https://doi.org/10.1093/bioinformatics/bts552
  • Open Access
    Brandt, B. W., Bonder, M. J., Huse, S. M., & Zaura, E. (2012). TaxMan: a server to trim rRNA reference databases and inspect taxonomic coverage. Nucleic Acids Research, 40(W1), W82-W87. https://doi.org/10.1093/nar/gks418
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