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Results: 52
Number of items: 52
  • Open Access
    Ziesemer, K. A., Mann, A. E., Sankaranarayanan, K., Schroeder, H., Ozga, A. T., Brandt, B. W., Zaura, E., Waters-Rist, A., Hoogland, M., Salazar-García, D. C., Aldenderfer, M., Speller, C., Hendy, J., Weston, D. A., MacDonald, S. J., Thomas, G. H., Collins, M. J., Lewis, C. M., Hofman, C., & Warinner, C. (2015). Intrinsic challenges in ancient microbiome reconstruction using 16S rRNA gene amplification. Scientific Reports, 5, Article 16498. https://doi.org/10.1038/srep16498
  • Open Access
    Wintermans, B. B., Brandt, B. W., Vandenbroucke-Grauls, C. M. J. E., & Budding, A. E. (2015). TreeSeq, a fast and intuitive tool for analysis of whole genome and metagenomic sequence data. PLoS ONE, 10(5), Article e0133816. https://doi.org/10.1371/journal.pone.0123851
  • May, A., Abeln, S., Crielaard, W., Heringa, J., & Brandt, B. W. (2014). Unraveling the outcome of 16S rDNA-based taxonomy analysis through mock data and simulations. Bioinformatics, 30(11), 1530-1538. https://doi.org/10.1093/bioinformatics/btu085
  • Open Access
    El-Kebir, M., Brandt, B. W., Heringa, J., & Klau, G. W. (2014). NatalieQ: A web server for protein-protein interaction network querying. BMC Systems Biology, 8, 40. https://doi.org/10.1186/1752-0509-8-40
  • Pajić, V. S., Pavlović-Lažetić, G. M., Beljanski, M. V., Brandt, B. W., & Pajić, M. B. (2013). Towards a database for genotype-phenotype association research: mining data from encyclopaedia. International Journal of Data Mining and Bioinformatics, 7(2), 196-213. https://doi.org/10.1504/IJDMB.2013.053196
  • Open Access
    Haitjema, A., Brandt, B. W., Ameziane, N., May, P., Heringa, J., de Winter, J. P., Joenje, H., & Dorsman, J. C. (2013). A protein prioritization approach tailored for the FA/BRCA pathway. PLoS ONE, 8(4), e62017. https://doi.org/10.1371/journal.pone.0062017
  • de Groot, P. W. J., & Brandt, B. W. (2012). ProFASTA: a pipeline web server for fungal protein scanning with integration of cell surface prediction software. Fungal Genetics and Biology, 49(2), 173-179. https://doi.org/10.1016/j.fgb.2011.12.009
  • Bonder, M. J., Abeln, S., Zaura, E., & Brandt, B. W. (2012). Comparing clustering and pre-processing in taxonomy analysis. Bioinformatics, 28(22), 2891-2897. https://doi.org/10.1093/bioinformatics/bts552
  • Open Access
    Brandt, B. W., Bonder, M. J., Huse, S. M., & Zaura, E. (2012). TaxMan: a server to trim rRNA reference databases and inspect taxonomic coverage. Nucleic Acids Research, 40(W1), W82-W87. https://doi.org/10.1093/nar/gks418
  • Wortman, J. R., Gilsenan, J. M., Joardar, V., Deegan, J., Clutterbuck, J., Andersen, M. R., Archer, D., Bencina, M., Braus, G., Coutinho, P., von Döhren, H., Doonan, J., Driessen, A. J. M., Durek, P., Espeso, E., Fekete, E., Flipphi, M., Estrada, C. G., Geysens, S., ... Turner, G. (2009). The 2008 update of the Aspergillus nidulans genome annotation: A community effort. Fungal Genetics and Biology, 46(1), S2-S13. https://doi.org/10.1016/j.fgb.2008.12.003
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