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Results: 104
Number of items: 104
  • Open Access
    Mirabella, R., Rauwerda, H., Allmann, S., Scala, A., Spyropoulou, E. A., de Vries, M., Boersma, M. R., Breit, T. M., Haring, M. A., & Schuurink, R. C. (2015). WRKY40 and WRKY6 act downstream of the green leaf volatile E-2-hexenal in Arabidopsis. Plant Journal, 83(6), 1082-1096. https://doi.org/10.1111/tpj.12953
  • Open Access
    Bruning, O., Rauwerda, H., Dekker, R. J., de Leeuw, W. C., Wackers, P. F. K., Ensink, W. A., Jonker, M. J., & Breit, T. M. (2015). Valuable lessons-learned in transcriptomics experimentation. Transcription, 6(3), 51-55. https://doi.org/10.1080/21541264.2015.1064195
  • Open Access
    Locati, M. D., Terpstra, I., de Leeuw, W. C., Kuzak, M., Rauwerda, H., Ensink, W. A., van Leeuwen, S., Nehrdich, U., Spaink, H. P., Jonker, M. J., Breit, T. M., & Dekker, R. J. (2015). Improving small RNA-seq by using a synthetic spike-in set for size-range quality control together with a set for data normalization. Nucleic Acids Research, 43(14), Article e89. https://doi.org/10.1093/nar/gkv303
  • Open Access
    Bruning, O. (2015). Improving design, execution and analysis of transcriptomics experimentation. [Thesis, fully internal, Universiteit van Amsterdam].
  • The 100 Tomato Genome Sequencing Consortium, Aflitos, S., de Jong, H., Smit, S., Breit, T., Gravendeel, B., Schranz, E., Vos, R., & Rauwerda, J. (2014). Exploring genetic variation in the tomato (Solanum section Lycopersicon) clade by whole-genome sequencing. Plant Journal, 80(1), 136-148. https://doi.org/10.1111/tpj.12616
  • Melis, J. P. M., Derks, K. W. J., Pronk, T. E., Wackers, P., Schaap, M. M., Zwart, E., van IJcken, W. F. J., Jonker, M. J., Breit, T. M., Pothof, J., van Steeg, H., & Luijten, M. (2014). In vivo murine hepatic microRNA and mRNA expression signatures predicting the (non-)genotoxic carcinogenic potential of chemicals. Archives of toxicology = Archiv für Toxikologie, 88(4), 1023-1034. https://doi.org/10.1007/s00204-013-1189-z
  • van Dycke, K. C., Nijman, R. M., Wackers, P. F. K., Jonker, M. J., Rodenburg, W., van Oostrom, C. T. M., Salvatori, D. C. F., Breit, T. M., van Steeg, H., Luijten, M., & van der Horst, G. T. J. (2014). A day and night difference in the response of the hepatic transcriptome to cyclophosphamide treatment. Archives of toxicology = Archiv für Toxikologie, 89(2), 221-231. https://doi.org/10.1007/s00204-014-1257-z
  • Open Access
    Jonker, M. J., de Leeuw, W. C., Marinković, M., Wittink, F. R. A., Rauwerda, H., Bruning, O., Ensink, W. A., Fluit, A. C., Boel, C. H., de Jong, M., & Breit, T. M. (2014). Absence/presence calling in microarray-based CGH experiments with non-model organisms. Nucleic Acids Research, 42(11), e94. https://doi.org/10.1093/nar/gku343
  • Open Access
    Bruning, O., Rodenburg, W., van Oostrom, C. T., Jonker, M. J., de Jong, M., Dekker, R. J., Rauwerda, H., Ensink, W. A., de Vries, A., & Breit, T. M. (2014). A range finding protocol to support design for transcriptomics experimentation: examples of in-vitro and in-vivo murine UV exposure. PLoS ONE, 9(5), e97089. https://doi.org/10.1371/journal.pone.0097089
  • Open Access
    Tulinski, P., Duim, B., Wittink, F. R., Jonker, M. J., Breit, T. M., van Putten, J. P., Wagenaar, J. A., & Fluit, A. C. (2014). Staphylococcus aureus ST398 gene expression profiling during ex vivo colonization of porcine nasal epithelium. BMC Genomics, 15, 915. https://doi.org/10.1186/1471-2164-15-915
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