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Results: 81
Number of items: 81
  • Open Access
    Hu, Y., Schwab, S., Deiss, S., Escudeiro, P., van Heesch, T., Joiner, J. D., Vreede, J., Hartmann, M. D., Lupas, A. N., Alvarez, B. H., Alva, V., & Dame, R. T. (2024). Bacterial histone HBb from Bdellovibrio bacteriovorus compacts DNA by bending. Nucleic Acids Research, 52(14), 8193-8204. https://doi.org/10.1093/nar/gkae485
  • van Heesch, T., Vreede, J., & Bolhuis, P. G. (2023). SMD Simulations of ETS Inverse Sequence [Data set]. Figshare. https://doi.org/10.6084/m9.figshare.24161295.v1
  • Bolhuis, P. G., Vreede, J., & van Heesch, T. (2023). SMD Simulations of ETS Consensus Sequence [Data set]. Figshare. https://doi.org/10.6084/m9.figshare.24161280.v1
  • van Heesch, T., Vreede, J., & Bolhuis, P. G. (2023). SMD Simulations of ETS Anti Sequence [Data set]. Figshare. https://doi.org/10.6084/m9.figshare.24161301.v1
  • Hu, Y., Schwab, S., Deiss, S., Escudeiro, P., van Heesch, T., D. Joiner, J., Vreede, J., Hartmann, M. D., Lupas, A. N., Alvarez, B. H., Alva, V., & Dame, R. T. (2023, November 27). Bacterial histone HBb from Bdellovibrio bacteriovorus compacts DNA by bending [Data set]. Zenodo. https://doi.org/10.5281/zenodo.10211306
  • van Heesch, T., Bolhuis, P. G., & Vreede, J. (2023). SMD Simulations of GC-analogue Sequence [Data set]. Figshare. https://doi.org/10.6084/m9.figshare.22182562.v1
  • van Heesch, T., Vreede, J., & Bolhuis, P. G. (2023). SMD Simulations of High Affinity Sequence [Data set]. Figshare. https://doi.org/10.6084/m9.figshare.21304482.v1
  • Open Access
    van Heesch, T., Bolhuis, P. G., & Vreede, J. (2023). Decoding dissociation of sequence-specific protein-DNA complexes with non-equilibrium simulations. Nucleic Acids Research, 51(22), 12150-12160. https://doi.org/10.1093/nar/gkad1014
  • Open Access
    Voorspoels, A., Vreede, J., & Carlon, E. (2023). Rigid Base Biasing in Molecular Dynamics Enables Enhanced Sampling of DNA Conformations. Journal of Chemical Theory and Computation, 19(3), 902-909. https://doi.org/10.1021/acs.jctc.2c00889
  • Open Access
    Roet, S., Hooft, F., Bolhuis, P. G., Swenson, D. W. H., & Vreede, J. (2022). Path Sampling Simulations Reveal How the Q61L Mutation Alters the Dynamics of KRas. Journal of Physical Chemistry B, 126(48), 10034-10044. https://doi.org/10.1021/acs.jpcb.2c06235
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