Search results

  • Full text

  • Document type

    • Publication year

  • Organisation

Results: 28
Number of items: 28
  • Open Access
    Li, L., Hoefsloot, H., Bakker, B. M., Horner, D., Rasmussen, M. A., Smilde, A. K., & Acar, E. (2025). Longitudinal Metabolomics Data Analysis Informed by Mechanistic Models. Metabolites, 15(1), Article 2. https://doi.org/10.3390/metabo15010002
  • Open Access
    Li, L., Yan, S., Bakker, B. M., Hoefsloot, H., Chawes, B., Horner, D., Rasmussen, M. A., Smilde, A. K., & Acar, E. (2024). Analyzing postprandial metabolomics data using multiway models: a simulation study. BMC Bioinformatics, 25, Article 94. https://doi.org/10.1186/s12859-024-05686-w
  • Swainston, N., Baici, A., Bakker, B. M., Cornish-Bowden, A., Fitzpatrick, P. F., Halling, P., Leyh, T. S., O'Donovan, C., Raushel, F. M., Reschel, U., Rohwer, J. M., Schnell, S., Schomburg, D., Tipton, K. F., Tsai, M.-D., Westerhoff, H. V., Wittig, U., Wohlgemuth, R., & Kettner, C. (2018). STRENDA DB: enabling the validation and sharing of enzyme kinetics data. The FEBS Journal, 285(12), 2193-2204. https://doi.org/10.1111/febs.14427
  • Open Access
    Haanstra, J. R., Gerding, A., Dolga, A. M., Sorgdrager, F. J. H., Buist-Homan, M., du Toit, F., Faber, K. N., Holzhütter, H.-G., Szöör, B., Matthews, K. R., Snoep, J. L., Westerhoff, H. V., & Bakker, B. M. (2017). Targeting pathogen metabolism without collateral damage to the host. Scientific Reports, 7, Article 40406. https://doi.org/10.1038/srep40406
  • Mensonides, F. I., Bakker, B. M., Cremazy, F., Messiha, H. L., Mendes, P., Boogerd, F. C., & Westerhoff, H. V. (2013). A new regulatory principle for in vivo biochemistry: pleiotropic low affinity regulation by the adenine nucleotides--illustrated for the glycolytic enzymes of Saccharomyces cerevisiae. FEBS Letters, 587(17), 2860-2867. https://doi.org/10.1016/j.febslet.2013.07.013
  • Open Access
    van Eunen, K., Kiewiet, J. A. L., Westerhoff, H. V., & Bakker, B. M. (2012). Testing biochemistry revisited: how in vivo metabolism can be understood from in vitro enzyme kinetics. PLoS Computational Biology, 8(4), e1002483. https://doi.org/10.1371/journal.pcbi.1002483
  • van Eunen, K., Bouwman, J., Daran-Lapujade, P., Postmus, J., Canelas, A. B., Mensonides, F. I. C., Orij, R., Tuzun, I., van den Brink, J., Smits, G. J., van Gulik, W. M., Brul, S., Heijnen, J. J., de Winde, J. H., Teixeira De Mattos, M. J., Kettner, C., Nielsen, J., Westerhoff, H. V., & Bakker, B. M. (2010). Measuring enzyme activities under standardized in vivo-like conditions for systems biology. The FEBS Journal, 277(3), 749-760. https://doi.org/10.1111/j.1742-4658.2009.07524.x
  • Schuurmans, J. M., Rossell, S. L., van Tuijl, A., Bakker, B. M., Hellingwerf, K. J., & Teixeira De Mattos, M. J. (2008). Effect of hxk2 deletion and HAP4 overexpression on fermentative capacity in Saccharomyces cerevisiae. FEMS Yeast Research, 8(2), 195-203. https://doi.org/10.1111/j.1567-1364.2007.00319.x
  • Postmus, J., Canelas, A. B., Bouwman, J., Bakker, B. M., van Gulik, W., Teixeira De Mattos, M. J., Brul, S., & Smits, G. J. (2008). Quantitative analysis of the high temperature-induced glycolytic flux increase in Saccharomyces cerevisiae reveals dominant metabolic regulation. The Journal of Biological Chemistry, 283(35), 23524-23532. https://doi.org/10.1074/jbc.M802908200
  • Bouwman, J., van Eunen, K., Tuzun, I., Postmus, J., Canelas, A., van der Brink, J., Lindenbergh, P. A., Teixeira De Mattos, M. J., Smits, G. J., Daran-Lapujade, P. A. L., van Gulik, W. M., van Spanning, R. J., Heijnen, J. J., de Winde, J. H., Brul, S., Hellingwerf, K. J., Westerhoff, H. V., & Bakker, B. M. (2007). Standardization and 'in vivo'-like enzyme activity measurements in yeast. In M. G. Hicks, & C. Kettner (Eds.), Proceedings of the 2nd International Beilstein Workshop on Experimental Standard Conditions of Enzyme Characterizations: March 19th -23rd, 2006, Rüdesheim/Rhein, Germany (pp. 11-20). Logos-Verlag. http://www.beilstein-institut.de/download/676/06_escec_06_druck_071122.pdf
Page 1 of 3