Benchmarking coarse-grained models of organic semiconductors via deep backmapping

Open Access
Authors
  • M. Stieffenhofer
  • C. Scherer
  • F. May
  • T. Bereau ORCID logo
  • D. Andrienko
Publication date 09-09-2022
Journal Frontiers in Chemistry
Article number 982757
Volume | Issue number 10
Number of pages 9
Organisations
  • Faculty of Science (FNWI) - Van 't Hoff Institute for Molecular Sciences (HIMS)
Abstract
The potential of mean force is an effective coarse-grained potential, which is often approximated by pairwise potentials. While the approximated potential reproduces certain distributions of the reference all-atom model with remarkable accuracy, important cross-correlations are typically not captured. In general, the quality of coarse-grained models is evaluated at the coarse-grained resolution, hindering the detection of important discrepancies between the all-atom and coarse-grained ensembles. In this work, the quality of different coarse-grained models is assessed at the atomistic resolution deploying reverse-mapping strategies. In particular, coarse-grained structures for Tris-Meta-Biphenyl-Triazine are reverse-mapped from two different sources: 1) All-atom configurations projected onto the coarse-grained resolution and 2) snapshots obtained by molecular dynamics simulations based on the coarse-grained force fields. To assess the quality of the coarse-grained models, reverse-mapped structures of both sources are compared revealing significant discrepancies between the all-atom and the coarse-grained ensembles. Specifically, the reintroduced details enable force computations based on the all-atom force field that yield a clear ranking for the quality of the different coarse-grained models.
Document type Article
Language English
Published at https://doi.org/10.3389/fchem.2022.982757
Other links https://www.scopus.com/pages/publications/85138791191
Downloads
Benchmarking coarse-grained models (Final published version)
Supplementary materials
Permalink to this page
Back