A large-scale species level dated angiosperm phylogeny for evolutionary and ecological analyses

Open Access
Authors
  • S.B. Janssens
  • T.L.P. Couvreur
  • A. Mertens
  • G. Dauby
  • L.-P.M.J. Dagallier
  • S. Vanden Abeele
  • F. Vandelook
  • M. Mascarello
  • H. Beeckman
  • M. Sosef
  • V. Droissart
  • M. van der Bank
  • O. Maurin
  • W. Hawthorne
  • C. Marshall
  • M. Réjou-Méchain
  • D. Beina
  • F. Baya
  • V. Merckx ORCID logo
  • B. Verstraete
  • O. Hardy
Publication date 21-01-2020
Journal Biodiversity Data Journal
Article number e39677
Volume | Issue number 8
Number of pages 23
Organisations
  • Faculty of Science (FNWI) - Institute for Biodiversity and Ecosystem Dynamics (IBED)
Abstract

Phylogenies are a central and indispensable tool for evolutionary and ecological research. Even though most angiosperm families are well investigated from a phylogenetic point of view, there are far less possibilities to carry out large-scale meta-analyses at order level or higher. Here, we reconstructed a large-scale dated phylogeny including nearly 1/8th of all angiosperm species, based on two plastid barcoding genes, matK (incl. trnK) and rbcL. Novel sequences were generated for several species, while the rest of the data were mined from GenBank. The resulting tree was dated using 56 angiosperm fossils as calibration points. The resulting megaphylogeny is one of the largest dated phylogenetic tree of angiosperms yet, consisting of 36,101 sampled species, representing 8,399 genera, 426 families and all orders. This novel framework will be useful for investigating different broad scale research questions in ecological and evolutionary biology.

Document type Article
Note With supplementary materials
Language English
Related dataset Supplementary material 4 from: Janssens SB, Couvreur TL.P, Mertens A, Dauby G, Dagallier L-PMJ, Vanden Abeele S, Vandelook F, Mascarello M, Beeckman H, Sosef M, Droissart V, van der Bank M, Maurin O, Hawthorne W, Marshall C, Réjou-Méchain M, Beina D, Baya F, Merckx V, Verstraete B, Hardy O (2020) A large-scale species level dated angiosperm phylogeny for evolutionary and ecological analyses. Biodiversity Data Journal 8: e39677. https://doi.org/10.3897/BDJ.8.e39677 Supplementary material 1 from: Janssens SB, Couvreur TL.P, Mertens A, Dauby G, Dagallier L-PMJ, Vanden Abeele S, Vandelook F, Mascarello M, Beeckman H, Sosef M, Droissart V, van der Bank M, Maurin O, Hawthorne W, Marshall C, Réjou-Méchain M, Beina D, Baya F, Merckx V, Verstraete B, Hardy O (2020) A large-scale species level dated angiosperm phylogeny for evolutionary and ecological analyses. Biodiversity Data Journal 8: e39677. https://doi.org/10.3897/BDJ.8.e39677 Supplementary material 2 from: Janssens SB, Couvreur TL.P, Mertens A, Dauby G, Dagallier L-PMJ, Vanden Abeele S, Vandelook F, Mascarello M, Beeckman H, Sosef M, Droissart V, van der Bank M, Maurin O, Hawthorne W, Marshall C, Réjou-Méchain M, Beina D, Baya F, Merckx V, Verstraete B, Hardy O (2020) A large-scale species level dated angiosperm phylogeny for evolutionary and ecological analyses. Biodiversity Data Journal 8: e39677. https://doi.org/10.3897/BDJ.8.e39677 Supplementary material 3 from: Janssens SB, Couvreur TL.P, Mertens A, Dauby G, Dagallier L-PMJ, Vanden Abeele S, Vandelook F, Mascarello M, Beeckman H, Sosef M, Droissart V, van der Bank M, Maurin O, Hawthorne W, Marshall C, Réjou-Méchain M, Beina D, Baya F, Merckx V, Verstraete B, Hardy O (2020) A large-scale species level dated angiosperm phylogeny for evolutionary and ecological analyses. Biodiversity Data Journal 8: e39677. https://doi.org/10.3897/BDJ.8.e39677 Supplementary material 5 from: Janssens SB, Couvreur TL.P, Mertens A, Dauby G, Dagallier L-PMJ, Vanden Abeele S, Vandelook F, Mascarello M, Beeckman H, Sosef M, Droissart V, van der Bank M, Maurin O, Hawthorne W, Marshall C, Réjou-Méchain M, Beina D, Baya F, Merckx V, Verstraete B, Hardy O (2020) A large-scale species level dated angiosperm phylogeny for evolutionary and ecological analyses. Biodiversity Data Journal 8: e39677. https://doi.org/10.3897/BDJ.8.e39677
Published at https://doi.org/10.3897/BDJ.8.E39677
Other links https://www.scopus.com/pages/publications/85084219138
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BDJ_article_39677 (Final published version)
Supplementary materials
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