Efficient constraint dynamics using MILC SHAKE

Authors
Publication date 2008
Journal Journal of computational Physics
Volume | Issue number 227 | 20
Pages (from-to) 8949-8959
Organisations
  • Faculty of Science (FNWI) - Van 't Hoff Institute for Molecular Sciences (HIMS)
Abstract We address the problem of imposing rigid constraints between connected sites in a dynamic computer simulation. For two important cases, the linear and ring topologies, each site is connected to at most two nearest neighbors. The constraint matrix is then invertible in order n operations. We show that, this being the case, a computational method based on a matrix inversion of the linearized constraint equations (MILC SHAKE) can be orders of magnitude faster than the simple SHAKE or RATTLE methods.
Document type Article
Published at https://doi.org/10.1016/j.jcp.2008.07.002
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